Index

_

__array__() (bandhic.band_hic_matrix method) __array_priority__() (bandhic.band_hic_matrix method) __bool__() (bandhic.band_hic_matrix method) __getitem__() (bandhic.band_hic_matrix method) __hash__() (bandhic.band_hic_matrix method)

__init__() (bandhic.band_hic_matrix method) __iter__() (bandhic.band_hic_matrix method) __len__() (bandhic.band_hic_matrix method) __repr__() (bandhic.band_hic_matrix method) __setitem__() (bandhic.band_hic_matrix method) __str__() (bandhic.band_hic_matrix method)

A

absolute() (bandhic.band_hic_matrix method) (in module bandhic) add() (bandhic.band_hic_matrix method) (in module bandhic) add_mask() (bandhic.band_hic_matrix method) add_mask_row_col() (bandhic.band_hic_matrix method) all() (bandhic.band_hic_matrix method) (in module bandhic) any() (bandhic.band_hic_matrix method) (in module bandhic) arccos() (bandhic.band_hic_matrix method) (in module bandhic) arccosh() (bandhic.band_hic_matrix method) (in module bandhic)

arcsin() (bandhic.band_hic_matrix method) (in module bandhic) arcsinh() (bandhic.band_hic_matrix method) (in module bandhic) arctan() (bandhic.band_hic_matrix method) (in module bandhic) arctan2() (bandhic.band_hic_matrix method) (in module bandhic) arctanh() (bandhic.band_hic_matrix method) (in module bandhic) assert_band_matrix_equal() (in module bandhic) astype() (bandhic.band_hic_matrix method)

B

band_hic_matrix (class in bandhic) bin_num (bandhic.band_hic_matrix attribute) bitwise_and() (bandhic.band_hic_matrix method) (in module bandhic)

bitwise_or() (bandhic.band_hic_matrix method) (in module bandhic) bitwise_xor() (bandhic.band_hic_matrix method) (in module bandhic)

C

call_tad() (in module bandhic) cbrt() (bandhic.band_hic_matrix method) (in module bandhic) clear_mask() (bandhic.band_hic_matrix method) clip() (bandhic.band_hic_matrix method) (in module bandhic) compute_bin_bias() (in module bandhic) conj() (bandhic.band_hic_matrix method) (in module bandhic) conjugate() (bandhic.band_hic_matrix method) (in module bandhic) cooler_all_cells_all_chrs() (in module bandhic) cooler_all_chrs() (in module bandhic)

cooler_chr() (in module bandhic) cooler_chr_all_cells() (in module bandhic) copy() (bandhic.band_hic_matrix method) cos() (bandhic.band_hic_matrix method) (in module bandhic) cosh() (bandhic.band_hic_matrix method) (in module bandhic) count_in_band() (bandhic.band_hic_matrix method) count_in_band_masked() (bandhic.band_hic_matrix method) count_masked() (bandhic.band_hic_matrix method) count_out_band() (bandhic.band_hic_matrix method) count_out_band_masked() (bandhic.band_hic_matrix method) count_unmasked() (bandhic.band_hic_matrix method)

D

data (bandhic.band_hic_matrix attribute) default_value (bandhic.band_hic_matrix attribute) deg2rad() (bandhic.band_hic_matrix method) (in module bandhic) degrees() (bandhic.band_hic_matrix method) (in module bandhic) diag() (bandhic.band_hic_matrix method) diag_num (bandhic.band_hic_matrix attribute)

divide() (bandhic.band_hic_matrix method) (in module bandhic) divmod() (bandhic.band_hic_matrix method) (in module bandhic) drop_mask() (bandhic.band_hic_matrix method) drop_mask_row_col() (bandhic.band_hic_matrix method) dtype (bandhic.band_hic_matrix attribute) dump() (bandhic.band_hic_matrix method)

E

equal() (bandhic.band_hic_matrix method) (in module bandhic) exp() (bandhic.band_hic_matrix method) (in module bandhic) exp2() (bandhic.band_hic_matrix method) (in module bandhic)

expm1() (bandhic.band_hic_matrix method) (in module bandhic) extract_row() (bandhic.band_hic_matrix method) eye() (in module bandhic) eye_like() (in module bandhic)

F

fabs() (bandhic.band_hic_matrix method) (in module bandhic) filled() (bandhic.band_hic_matrix method) float_power() (bandhic.band_hic_matrix method) (in module bandhic)

floor_divide() (bandhic.band_hic_matrix method) (in module bandhic) fmod() (bandhic.band_hic_matrix method) (in module bandhic) full() (in module bandhic) full_like() (in module bandhic)

G

gcd() (bandhic.band_hic_matrix method) (in module bandhic) get_mask() (bandhic.band_hic_matrix method) get_mask_row_col() (bandhic.band_hic_matrix method)

get_values() (bandhic.band_hic_matrix method) greater() (bandhic.band_hic_matrix method) (in module bandhic) greater_equal() (bandhic.band_hic_matrix method) (in module bandhic)

H

heaviside() (bandhic.band_hic_matrix method) (in module bandhic)

hypot() (bandhic.band_hic_matrix method) (in module bandhic)

I

init_mask() (bandhic.band_hic_matrix method) invert() (bandhic.band_hic_matrix method) (in module bandhic)

itercols() (bandhic.band_hic_matrix method) iterrows() (bandhic.band_hic_matrix method) iterwindows() (bandhic.band_hic_matrix method)

L

lcm() (bandhic.band_hic_matrix method) (in module bandhic) left_shift() (bandhic.band_hic_matrix method) (in module bandhic) less() (bandhic.band_hic_matrix method) (in module bandhic) less_equal() (bandhic.band_hic_matrix method) (in module bandhic) load_npz() (in module bandhic) log() (bandhic.band_hic_matrix method) (in module bandhic) log10() (bandhic.band_hic_matrix method) (in module bandhic)

log1p() (bandhic.band_hic_matrix method) (in module bandhic) log2() (bandhic.band_hic_matrix method) (in module bandhic) logaddexp() (bandhic.band_hic_matrix method) (in module bandhic) logaddexp2() (bandhic.band_hic_matrix method) (in module bandhic) logical_and() (bandhic.band_hic_matrix method) (in module bandhic) logical_or() (bandhic.band_hic_matrix method) (in module bandhic) logical_xor() (bandhic.band_hic_matrix method) (in module bandhic)

M

mask (bandhic.band_hic_matrix attribute) mask_row_col (bandhic.band_hic_matrix attribute) matrix_equal() (in module bandhic) max() (bandhic.band_hic_matrix method) (in module bandhic) maximum() (bandhic.band_hic_matrix method) (in module bandhic) mean() (bandhic.band_hic_matrix method) (in module bandhic)

memory_usage() (bandhic.band_hic_matrix method) min() (bandhic.band_hic_matrix method) (in module bandhic) minimum() (bandhic.band_hic_matrix method) (in module bandhic) mod() (bandhic.band_hic_matrix method) (in module bandhic) multiply() (bandhic.band_hic_matrix method) (in module bandhic)

N

negative() (bandhic.band_hic_matrix method) (in module bandhic) normalize() (bandhic.band_hic_matrix method) (in module bandhic)

not_equal() (bandhic.band_hic_matrix method) (in module bandhic)

O

ones() (in module bandhic)

ones_like() (in module bandhic)

P

positive() (bandhic.band_hic_matrix method) (in module bandhic) power() (bandhic.band_hic_matrix method) (in module bandhic)

prod() (bandhic.band_hic_matrix method) (in module bandhic) ptp() (bandhic.band_hic_matrix method) (in module bandhic)

R

rad2deg() (bandhic.band_hic_matrix method) (in module bandhic) radians() (bandhic.band_hic_matrix method) (in module bandhic) reciprocal() (bandhic.band_hic_matrix method) (in module bandhic)

remainder() (bandhic.band_hic_matrix method) (in module bandhic) right_shift() (bandhic.band_hic_matrix method) (in module bandhic) rint() (bandhic.band_hic_matrix method) (in module bandhic)

S

save_npz() (in module bandhic) set_diag() (bandhic.band_hic_matrix method) set_values() (bandhic.band_hic_matrix method) shape (bandhic.band_hic_matrix attribute) sign() (bandhic.band_hic_matrix method) (in module bandhic) sin() (bandhic.band_hic_matrix method) (in module bandhic) sinh() (bandhic.band_hic_matrix method) (in module bandhic) sqrt() (bandhic.band_hic_matrix method) (in module bandhic)

square() (bandhic.band_hic_matrix method) (in module bandhic) std() (bandhic.band_hic_matrix method) (in module bandhic) straw_all_chrs() (in module bandhic) straw_chr() (in module bandhic) subtract() (bandhic.band_hic_matrix method) (in module bandhic) sum() (bandhic.band_hic_matrix method) (in module bandhic)

T

tan() (bandhic.band_hic_matrix method) (in module bandhic) tanh() (bandhic.band_hic_matrix method) (in module bandhic) tocoo() (bandhic.band_hic_matrix method)

tocsr() (bandhic.band_hic_matrix method) todense() (bandhic.band_hic_matrix method) topdom() (in module bandhic) true_divide() (bandhic.band_hic_matrix method) (in module bandhic)

U

unmask() (bandhic.band_hic_matrix method)

V

var() (bandhic.band_hic_matrix method) (in module bandhic)

Z

zeros() (in module bandhic)

zeros_like() (in module bandhic)